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Simultaneous label-free live imaging of cell nucleus and luminescent nanodiamonds

MetadataDetails
Publication Date2020-06-17
JournalScientific Reports
AuthorsMichal Gulka, Hamideh Salehi, Béla Varga, Elodie Middendorp, Orsolya Påll
InstitutionsCzech Academy of Sciences, Institute of Organic Chemistry and Biochemistry, Hasselt University
Citations15
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This research introduces a robust, label-free methodology for the simultaneous visualization of the cell nucleus and fluorescent nanodiamond (fND) probes in living cells, crucial for advancing intracellular quantum sensing.

  • Core Achievement: Demonstrated simultaneous detection of NV center photoluminescence (PL) and label-free Raman chemical imaging of the cell nucleus in a single confocal scan.
  • Enhanced Sensitivity: Achieved high-sensitivity fND localization by shifting the Raman grating center to 680 nm, capturing the majority of NV PL emission (670-890 nm) and increasing detection sensitivity by more than six times compared to standard settings.
  • Label-Free Nucleus Imaging: Nucleus visualization is achieved without staining or fixation by mapping the C-H stretching mode Raman peak (2800-3010 cm-1), exploiting the inherent contrast based on the protein/lipid ratio.
  • Chemical Localization: K-means cluster analysis (KMCA) is applied to the combined spectral data to chemically distinguish and localize fNDs, confirming their internalization and colocalization with the nucleus within the diffraction-limited volume.
  • Probe Compatibility: The technique is compatible with any red- or near-infrared-luminescent cell probes (e.g., silicon-vacancy, quantum dots) and is fully compatible with NV quantum sensing measurements.
  • Robustness: The method was successfully validated on three diverse cell lines (MCF7, 184A1, and DPSC) in both living and fixed states.
ParameterValueUnitContext
fND Particle Size Range5 - 50nmHPHT, oxidized, majority 20 nm
Electron Irradiation Energy16.6MeVUsed for NV center creation
Electron Irradiation Dose8.11 x 1018particles cm-2Used for NV center creation
Annealing Temperature900°CPost-irradiation treatment (1 h)
Oxidation Temperature510°CSurface purification (6 h)
Excitation Wavelength532nmConfocal Raman/PL microscopy (Nd:YAG laser)
Laser Power (Objective)20mWUsed for imaging
Objective Numerical Aperture (NA)1.0-60x Water Immersion
Lateral Resolution (flateral)325nmDiffraction-limited resolution
Axial Resolution (raxial)991nmDiffraction-limited resolution
Optimized Grating Center Wavelength680nmMaximizes NV PL detection sensitivity (>6x increase)
NV PL Emission Range (High Intensity)670 - 890nmCaptures ~70% of NV emission
C-H Stretching Mode Range2800 - 3010cm-1Used for label-free nucleus visualization
Nucleus Visualization Range (Negative Image)2800 - 2935cm-1Highlights lipid-poor regions (nucleus)
  1. fND Synthesis and Activation: High-pressure high-temperature (HPHT) nanodiamonds (5-50 nm) were purified, oxidized, and subjected to 16.6 MeV electron beam irradiation (8.11 x 1018 particles cm-2). This was followed by annealing at 900 °C for 1 h and subsequent oxidation at 510 °C for 6 h to create and activate NV centers.
  2. Cell Culture and Incubation: MCF7, 184A1, and DPSC cells were grown on CaF2 substrates. Cells were incubated with the prepared fND solution (30 ”g/ml) for 1 hour at 37 °C and 5% CO2 to facilitate internalization.
  3. Confocal PL/Raman Acquisition: Measurements were performed using a Witec Confocal Raman Microscope Alpha System 300 R with a 532 nm excitation laser (20 mW at the objective) and a 60x water immersion objective (NA = 1.0).
  4. Spectral Optimization: The detection grating was centered at 680 nm. This shift sacrifices the traditional Raman “fingerprint region” (700-1700 cm-1) but maximizes the collection of NV PL, enabling sensitive fND detection in a single, rapid scan.
  5. Label-Free Nucleus Mapping: The cell nucleus was visualized by mapping the intensity of the C-H stretching mode (2800-3010 cm-1). Specifically, the “negative image” was generated by mapping the lipid-rich region (2800-2935 cm-1), which appears dark in the lipid-poor nucleus, providing high contrast.
  6. Data Processing and Localization (KMCA): K-means cluster analysis (KMCA) was applied to the combined PL/Raman spectra. This unsupervised algorithm clustered pixels based on the presence and intensity of NV luminescence and the C-H Raman signal, allowing for the distinction of fNDs inside versus outside the cell.
  7. Image Merging: The final image was constructed as two stacked layers: the C-H Raman map (nucleus visualization) merged with the KMCA-identified NV-luminescent pixels (fND localization), demonstrating colocalization.
Industry/FieldApplication AreaTechnical Relevance
Quantum Sensing & MetrologyIntracellular Nanoscale SensingProvides essential localization data for NV-based quantum sensors (e.g., temperature, magnetic fields) within specific organelles, enabling precise measurement context.
Nanomedicine & Drug DeliveryMonitoring Nanoparticle TransportEnables label-free, real-time tracking of fND-based drug or gene carriers, verifying internalization and successful delivery to the cell nucleus or other targets.
Biomaterials & BiocompatibilityCytotoxicity and Uptake StudiesOffers a robust, non-toxic method to assess the interaction and accumulation of nanoprobes (fNDs, quantum dots) with living cells and nuclei over extended periods.
Advanced MicroscopyLabel-Free Chemical ImagingUtilizes the C-H stretching mode for rapid, high-contrast chemical mapping of protein/lipid ratios in cells, serving as a robust alternative to traditional fluorescent nuclear stains.
Probe DevelopmentRed/NIR Probe ValidationThe methodology is broadly applicable to localize any red- or near-infrared-luminescent probes (e.g., silicon-vacancy, germanium-vacancy centers) relative to cellular structures.